All Versions
48
Latest Version
Avg Release Cycle
54 days
Latest Release
250 days ago

Changelog History
Page 3

  • v0.28.1 Changes

    June 28, 2019
    • 🛠 Fix select in RankSelect in cases where many superblocks have the same rank.

  • v0.28.0 Changes

    June 19, 2019
    • 👍 Myers bit-parallel pattern matching now supports arbitrarily long patterns via bit vectors (thanks to @markschl).
    • 📚 Minor documentation updates (thanks to @anders-was-here).

  • v0.27.0 Changes

    May 31, 2019
    • Implement sequence-read-trait for FASTQ records.
    • Cleanup dependencies.

  • v0.26.1 Changes

    May 10, 2019
    • Fix a bug in select_1 and select_0 that would lead to too large answers.

  • v0.26.0 Changes

    May 09, 2019
    • ➕ Added a trait system for computing Bayesian statistical models.
    • ➕ Added an implementation of MSA via partial order alignment.
    • 🐎 Performance improvements to FASTQ reader.

  • v0.25.0 Changes

    December 12, 2018
    • ➕ Added FQRead and FARead traits to FastaReader and FastqReader to be more flexible with input types. This allows to use readers on gzipped and on plain text input interchangeably.
    • ➕ Added an implementation of Bayes Factors and evidence scoring using the method of Kass and Raftery.

  • v0.24.0 Changes

    November 26, 2018
    • API overhaul to become more flexible when accepting text iterators. Now, anything that iterates over something can be borrowed as u8 is allowed.
    • FMIndex and FMDIndex now also allow plain owned versions of BWT, Less and Occ. This should greatly simplify their usage.
    • 🐎 PairHMM and LogProb implementation has seen extensive performance improvements. Among that, (a) the usage of a fast approximation of exp() as presented by Kopczynsi 2017, and (b) banding of the pairHMM matrix with a given maximum edit distance.
    • 👍 All IO records now support serde.

  • v0.23.0 Changes

    November 08, 2018
    • Generalized Myers pattern matching algorithm to arbitrary unsigned integer types (u64, u128) (thanks to @markschl).
    • Implemented optional traceback and alignment output for Myers pattern matching algorithm (thanks to @markschl).
    • 👉 Use Strand type from bio-types crate in BED module (thanks to @ingolia).
    • ➕ Added an IntervalTree based data structure for looking up overlaps between annotation types (thanks to @ingolia).
    • 🛠 Various bug fixes.

  • v0.22.0 Changes

    August 01, 2018
    • ➕ Added HMM implementation (thanks to @holtgrewe).
    • 🚚 Moved Alignment types to bio_types crate (thanks to @pmarks).
    • Ignore comment lines in GTF/GFF files (thanks to Yasunobu Okamura).
    • API usability improvements.

  • v0.21.0 Changes

    June 19, 2018
    • ➕ Added PSSM implementation (thanks to @hervold).