All Versions
48
Latest Version
Avg Release Cycle
54 days
Latest Release
250 days ago
Changelog History
Page 3
Changelog History
Page 3
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v0.28.1 Changes
June 28, 2019- ๐ Fix select in RankSelect in cases where many superblocks have the same rank.
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v0.28.0 Changes
June 19, 2019- ๐ Myers bit-parallel pattern matching now supports arbitrarily long patterns via bit vectors (thanks to @markschl).
- ๐ Minor documentation updates (thanks to @anders-was-here).
-
v0.27.0 Changes
May 31, 2019- Implement sequence-read-trait for FASTQ records.
- Cleanup dependencies.
-
v0.26.1 Changes
May 10, 2019- Fix a bug in
select_1
andselect_0
that would lead to too large answers.
- Fix a bug in
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v0.26.0 Changes
May 09, 2019- โ Added a trait system for computing Bayesian statistical models.
- โ Added an implementation of MSA via partial order alignment.
- ๐ Performance improvements to FASTQ reader.
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v0.25.0 Changes
December 12, 2018- โ Added
FQRead
andFARead
traits toFastaReader
andFastqReader
to be more flexible with input types. This allows to use readers on gzipped and on plain text input interchangeably. - โ Added an implementation of Bayes Factors and evidence scoring using the method of Kass and Raftery.
- โ Added
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v0.24.0 Changes
November 26, 2018- API overhaul to become more flexible when accepting text iterators. Now, anything that iterates over something can be borrowed as u8 is allowed.
- FMIndex and FMDIndex now also allow plain owned versions of BWT, Less and Occ. This should greatly simplify their usage.
- ๐ PairHMM and LogProb implementation has seen extensive performance improvements. Among that, (a) the usage of a fast approximation of exp() as presented by Kopczynsi 2017, and (b) banding of the pairHMM matrix with a given maximum edit distance.
- ๐ All IO records now support serde.
-
v0.23.0 Changes
November 08, 2018- Generalized Myers pattern matching algorithm to arbitrary unsigned integer types (u64, u128) (thanks to @markschl).
- Implemented optional traceback and alignment output for Myers pattern matching algorithm (thanks to @markschl).
- ๐ Use Strand type from bio-types crate in BED module (thanks to @ingolia).
- โ Added an IntervalTree based data structure for looking up overlaps between annotation types (thanks to @ingolia).
- ๐ Various bug fixes.
-
v0.22.0 Changes
August 01, 2018- โ Added HMM implementation (thanks to @holtgrewe).
- ๐ Moved Alignment types to
bio_types
crate (thanks to @pmarks). - Ignore comment lines in GTF/GFF files (thanks to Yasunobu Okamura).
- API usability improvements.
-
v0.21.0 Changes
June 19, 2018- โ Added PSSM implementation (thanks to @hervold).