Avg Release Cycle
250 days ago
v0.28.1 ChangesJune 28, 2019
- 🛠 Fix select in RankSelect in cases where many superblocks have the same rank.
v0.28.0 ChangesJune 19, 2019
- 👍 Myers bit-parallel pattern matching now supports arbitrarily long patterns via bit vectors (thanks to @markschl).
- 📚 Minor documentation updates (thanks to @anders-was-here).
v0.27.0 ChangesMay 31, 2019
- Implement sequence-read-trait for FASTQ records.
- Cleanup dependencies.
v0.26.1 ChangesMay 10, 2019
- Fix a bug in
select_0that would lead to too large answers.
- Fix a bug in
v0.26.0 ChangesMay 09, 2019
- ➕ Added a trait system for computing Bayesian statistical models.
- ➕ Added an implementation of MSA via partial order alignment.
- 🐎 Performance improvements to FASTQ reader.
v0.25.0 ChangesDecember 12, 2018
- ➕ Added
FastqReaderto be more flexible with input types. This allows to use readers on gzipped and on plain text input interchangeably.
- ➕ Added an implementation of Bayes Factors and evidence scoring using the method of Kass and Raftery.
- ➕ Added
v0.24.0 ChangesNovember 26, 2018
- API overhaul to become more flexible when accepting text iterators. Now, anything that iterates over something can be borrowed as u8 is allowed.
- FMIndex and FMDIndex now also allow plain owned versions of BWT, Less and Occ. This should greatly simplify their usage.
- 🐎 PairHMM and LogProb implementation has seen extensive performance improvements. Among that, (a) the usage of a fast approximation of exp() as presented by Kopczynsi 2017, and (b) banding of the pairHMM matrix with a given maximum edit distance.
- 👍 All IO records now support serde.
v0.23.0 ChangesNovember 08, 2018
- Generalized Myers pattern matching algorithm to arbitrary unsigned integer types (u64, u128) (thanks to @markschl).
- Implemented optional traceback and alignment output for Myers pattern matching algorithm (thanks to @markschl).
- 👉 Use Strand type from bio-types crate in BED module (thanks to @ingolia).
- ➕ Added an IntervalTree based data structure for looking up overlaps between annotation types (thanks to @ingolia).
- 🛠 Various bug fixes.
v0.22.0 ChangesAugust 01, 2018
- ➕ Added HMM implementation (thanks to @holtgrewe).
- 🚚 Moved Alignment types to
bio_typescrate (thanks to @pmarks).
- Ignore comment lines in GTF/GFF files (thanks to Yasunobu Okamura).
- API usability improvements.
v0.21.0 ChangesJune 19, 2018
- ➕ Added PSSM implementation (thanks to @hervold).